J3_8V9J_002

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8V9J|1|A|U|801, 8V9J|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9J_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0847

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8V9J|1|A|U|798
8V9J|1|A|G|799
8V9J|1|A|A|800
8V9J|1|A|U|801
8V9J|1|A|C|802
8V9J|1|A|U|803
8V9J|1|A|A|804
*
8V9J|1|A|U|888
8V9J|1|A|A|889
8V9J|1|A|G|890
*
8V9J|1|A|C|906
8V9J|1|A|A|907
8V9J|1|A|A|908
8V9J|1|A|A|909

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2