3D structure

PDB id
8V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8V9L_003 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.064
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8V9L|1|A|C|813
8V9L|1|A|A|814
8V9L|1|A|G|815
*
8V9L|1|A|C|847
8V9L|1|A|G|848
8V9L|1|A|A|849
8V9L|1|A|A|850
8V9L|1|A|C|851
*
8V9L|1|A|G|875
8V9L|1|A|A|876
8V9L|1|A|U|877
8V9L|1|A|G|878

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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