J3_8V9L_021

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_021 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.1009

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|G|27
8V9L|1|A|C|28
*
8V9L|1|A|G|562
8V9L|1|A|U|563
8V9L|1|A|G|564
8V9L|1|A|A|565
8V9L|1|A|A|566
8V9L|1|A|A|567
8V9L|1|A|A|568
8V9L|1|A|G|569
*
8V9L|1|A|C|596
8V9L|1|A|C|597

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein uL22

Chain W

50S ribosomal protein L24