J3_8VIO_004

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

8VIO|1|A|U|318, 8VIO|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|G|317
8VIO|1|A|U|318
8VIO|1|A|G|319
*
8VIO|1|A|C|457
8VIO|1|A|G|458
8VIO|1|A|A|459
8VIO|1|A|G|460
8VIO|1|A|U|461
8VIO|1|A|A|462
8VIO|1|A|G|463
*
8VIO|1|A|U|487
8VIO|1|A|G|488
8VIO|1|A|A|489
8VIO|1|A|A|490
8VIO|1|A|U|491
8VIO|1|A|C|492

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S Ribosomal Protein L28