J3_8VIO_005

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UAUCUUU*AGG*CUUGAUGG

Length

18 nucleotides

Bulged bases

8VIO|1|A|U|330, 8VIO|1|A|U|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|U|325
8VIO|1|A|A|326
8VIO|1|A|U|327
8VIO|1|A|C|328
8VIO|1|A|U|329
8VIO|1|A|U|330
8VIO|1|A|U|331
*
8VIO|1|A|A|350
8VIO|1|A|G|351
8VIO|1|A|G|352
*
8VIO|1|A|C|443
8VIO|1|A|U|444
8VIO|1|A|U|445
8VIO|1|A|G|446
8VIO|1|A|A|447
8VIO|1|A|U|448
8VIO|1|A|G|449
8VIO|1|A|G|450

Current chains

Chain A

23S ribosomal RNA

Nearby chains