J3_8VIO_008

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VIO_008 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0887

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8VIO|1|A|C|813
8VIO|1|A|A|814
8VIO|1|A|G|815
*
8VIO|1|A|C|847
8VIO|1|A|G|848
8VIO|1|A|A|849
8VIO|1|A|A|850
8VIO|1|A|C|851
*
8VIO|1|A|G|875
8VIO|1|A|A|876
8VIO|1|A|U|877
8VIO|1|A|G|878

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2