J3_8VIO_013

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGUCCAUGAUGAA*UAGUAGUCAAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|C|1531
8VIO|1|A|G|1532
8VIO|1|A|U|1533
8VIO|1|A|C|1534
8VIO|1|A|C|1535
8VIO|1|A|A|1536
8VIO|1|A|U|1537
8VIO|1|A|G|1538
8VIO|1|A|A|1539
8VIO|1|A|U|1540
8VIO|1|A|G|1541
8VIO|1|A|A|1542
8VIO|1|A|A|1543
*
8VIO|1|A|U|1627
8VIO|1|A|A|1628
8VIO|1|A|G|1629
8VIO|1|A|U|1630
8VIO|1|A|A|1631
8VIO|1|A|G|1632
8VIO|1|A|U|1633
8VIO|1|A|C|1634
8VIO|1|A|A|1635
8VIO|1|A|A|1636
8VIO|1|A|G|1637
*
8VIO|1|A|C|1801
8VIO|1|A|G|1802
8VIO|1|A|A|1803
8VIO|1|A|G|1804

Current chains

Chain A

23S ribosomal RNA

Nearby chains