J3_8VIO_016
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8VIO|1|A|U|2614, 8VIO|1|A|A|2650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VIO_016 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1161
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VIO|1|A|G|2506
8VIO|1|A|C|2507
8VIO|1|A|C|2508
*
8VIO|1|A|G|2608
8VIO|1|A|A|2609
8VIO|1|A|C|2610
8VIO|1|A|U|2611
8VIO|1|A|A|2612
8VIO|1|A|G|2613
8VIO|1|A|U|2614
8VIO|1|A|G|2615
8VIO|1|A|A|2616
8VIO|1|A|U|2617
8VIO|1|A|C|2618
8VIO|1|A|C|2619
*
8VIO|1|A|G|2645
8VIO|1|A|C|2646
8VIO|1|A|U|2647
8VIO|1|A|C|2648
8VIO|1|A|A|2649
8VIO|1|A|A|2650
8VIO|1|A|C|2651
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
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