J3_8VIO_028
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CGGA*UAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VIO_028 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1292
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VIO|1|a|C|925
8VIO|1|a|G|926
8VIO|1|a|G|927
8VIO|1|a|A|928
*
8VIO|1|a|U|1216
8VIO|1|a|A|1217
8VIO|1|a|C|1218
*
8VIO|1|a|G|1319
8VIO|1|a|G|1320
8VIO|1|a|A|1321
8VIO|1|a|G|1322
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain m
- 30S ribosomal protein S7
- Chain o
- 30S ribosomal protein S9
- Chain t
- 30S ribosomal protein S13
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