J3_8VIO_029
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GAUUAAUUC*GAAGAACCUUAC*GGCUUC
- Length
- 27 nucleotides
- Bulged bases
- 8VIO|1|a|A|957, 8VIO|1|a|G|958, 8VIO|1|a|A|960, 8VIO|1|a|U|1206
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VIO_029 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.3878
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VIO|1|a|G|936
8VIO|1|a|A|937
8VIO|1|a|U|938
8VIO|1|a|U|939
8VIO|1|a|A|940
8VIO|1|a|A|941
8VIO|1|a|U|942
8VIO|1|a|U|943
8VIO|1|a|C|944
*
8VIO|1|a|G|955
8VIO|1|a|A|956
8VIO|1|a|A|957
8VIO|1|a|G|958
8VIO|1|a|A|959
8VIO|1|a|A|960
8VIO|1|a|C|961
8VIO|1|a|C|962
8VIO|1|a|U|963
8VIO|1|a|U|964
8VIO|1|a|A|965
8VIO|1|a|C|966
*
8VIO|1|a|G|1202
8VIO|1|a|G|1203
8VIO|1|a|C|1204
8VIO|1|a|U|1205
8VIO|1|a|U|1206
8VIO|1|a|C|1207
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain p
- 30S ribosomal protein S10
- Chain t
- 30S ribosomal protein S13
- Chain u
- 30S Ribosomal Protein S14
- Chain y
- 30S ribosomal protein S19
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