J3_8VIO_030
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- 8VIO|1|a|U|973, 8VIO|1|a|U|1193, 8VIO|1|a|U|1195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VIO_030 not in the Motif Atlas
- Geometric match to J3_5J7L_007
- Geometric discrepancy: 0.2695
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VIO|1|a|U|972
8VIO|1|a|U|973
8VIO|1|a|U|974
8VIO|1|a|G|975
*
8VIO|1|a|C|1025
8VIO|1|a|A|1026
8VIO|1|a|G|1027
*
8VIO|1|a|C|1191
8VIO|1|a|U|1192
8VIO|1|a|U|1193
8VIO|1|a|A|1194
8VIO|1|a|U|1195
8VIO|1|a|G|1196
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain u
- 30S Ribosomal Protein S14
Coloring options: