J3_8VIO_032

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCACAGGACGC*GUUCC*GGCCUGUGU

Length

25 nucleotides

Bulged bases

8VIO|1|a|U|1019

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|a|G|980
8VIO|1|a|C|981
8VIO|1|a|A|982
8VIO|1|a|C|983
8VIO|1|a|A|984
8VIO|1|a|G|985
8VIO|1|a|G|986
8VIO|1|a|A|987
8VIO|1|a|C|988
8VIO|1|a|G|989
8VIO|1|a|C|990
*
8VIO|1|a|G|1005
8VIO|1|a|U|1006
8VIO|1|a|U|1007
8VIO|1|a|C|1008
8VIO|1|a|C|1009
*
8VIO|1|a|G|1015
8VIO|1|a|G|1016
8VIO|1|a|C|1017
8VIO|1|a|C|1018
8VIO|1|a|U|1019
8VIO|1|a|G|1020
8VIO|1|a|U|1021
8VIO|1|a|G|1022
8VIO|1|a|U|1023

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S3