J3_8VIO_034

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCUUGU*AGAC*GGUGGGG

Length

17 nucleotides

Bulged bases

8VIO|1|a|U|1164, 8VIO|1|a|G|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|a|C|1093
8VIO|1|a|C|1094
8VIO|1|a|U|1095
8VIO|1|a|U|1096
8VIO|1|a|G|1097
8VIO|1|a|U|1098
*
8VIO|1|a|A|1136
8VIO|1|a|G|1137
8VIO|1|a|A|1138
8VIO|1|a|C|1139
*
8VIO|1|a|G|1162
8VIO|1|a|G|1163
8VIO|1|a|U|1164
8VIO|1|a|G|1165
8VIO|1|a|G|1166
8VIO|1|a|G|1167
8VIO|1|a|G|1168

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S Ribosomal Protein S2

Chain i

30S ribosomal protein S3

Chain o

30S ribosomal protein S9

Chain p

30S ribosomal protein S10

Chain u

30S Ribosomal Protein S14