J3_8VIO_036
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CAAUGG*UCUCAGUUCGGAUC*GUGAAGUCG
- Length
- 29 nucleotides
- Bulged bases
- 8VIO|1|a|U|1221, 8VIO|1|a|C|1278, 8VIO|1|a|C|1280, 8VIO|1|a|U|1284, 8VIO|1|a|C|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VIO|1|a|C|1218
8VIO|1|a|A|1219
8VIO|1|a|A|1220
8VIO|1|a|U|1221
8VIO|1|a|G|1222
8VIO|1|a|G|1223
*
8VIO|1|a|U|1277
8VIO|1|a|C|1278
8VIO|1|a|U|1279
8VIO|1|a|C|1280
8VIO|1|a|A|1281
8VIO|1|a|G|1282
8VIO|1|a|U|1283
8VIO|1|a|U|1284
8VIO|1|a|C|1285
8VIO|1|a|G|1286
8VIO|1|a|G|1287
8VIO|1|a|A|1288
8VIO|1|a|U|1289
8VIO|1|a|C|1290
*
8VIO|1|a|G|1311
8VIO|1|a|U|1312
8VIO|1|a|G|1313
8VIO|1|a|A|1314
8VIO|1|a|A|1315
8VIO|1|a|G|1316
8VIO|1|a|U|1317
8VIO|1|a|C|1318
8VIO|1|a|G|1319
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S7
- Chain t
- 30S ribosomal protein S13
Coloring options: