J3_8VK0_006

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

ACCUAUCUUU*AGG*CUUGAUGGUGUU

Length

25 nucleotides

Bulged bases

8VK0|1|A|U|330, 8VK0|1|A|U|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|A|322
8VK0|1|A|C|323
8VK0|1|A|C|324
8VK0|1|A|U|325
8VK0|1|A|A|326
8VK0|1|A|U|327
8VK0|1|A|C|328
8VK0|1|A|U|329
8VK0|1|A|U|330
8VK0|1|A|U|331
*
8VK0|1|A|A|350
8VK0|1|A|G|351
8VK0|1|A|G|352
*
8VK0|1|A|C|443
8VK0|1|A|U|444
8VK0|1|A|U|445
8VK0|1|A|G|446
8VK0|1|A|A|447
8VK0|1|A|U|448
8VK0|1|A|G|449
8VK0|1|A|G|450
8VK0|1|A|U|451
8VK0|1|A|G|452
8VK0|1|A|U|453
8VK0|1|A|U|454

Current chains

Chain A

23S ribosomal RNA

Nearby chains