J3_8VK0_007

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8VK0|1|A|U|801, 8VK0|1|A|A|907, 8VK0|1|A|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VK0_007 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.07

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VK0|1|A|U|798
8VK0|1|A|G|799
8VK0|1|A|A|800
8VK0|1|A|U|801
8VK0|1|A|C|802
8VK0|1|A|U|803
8VK0|1|A|A|804
*
8VK0|1|A|U|888
8VK0|1|A|A|889
8VK0|1|A|G|890
*
8VK0|1|A|C|906
8VK0|1|A|A|907
8VK0|1|A|A|908
8VK0|1|A|A|909

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain E

50S Ribosomal Protein L4

Chain d

50S ribosomal protein L34