J3_8VK0_018

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

8VK0|1|A|U|3054, 8VK0|1|A|A|3056, 8VK0|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|C|3035
8VK0|1|A|C|3036
8VK0|1|A|C|3037
*
8VK0|1|A|G|3051
8VK0|1|A|A|3052
8VK0|1|A|U|3053
8VK0|1|A|U|3054
8VK0|1|A|G|3055
8VK0|1|A|A|3056
8VK0|1|A|U|3057
*
8VK0|1|A|A|3103
8VK0|1|A|A|3104
8VK0|1|A|C|3105
8VK0|1|A|C|3106
8VK0|1|A|G|3107

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain b

50S ribosomal protein L32