J3_8VKI_006

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

ACCUAUCUUU*AGG*CUUGAUGGUGUU

Length

25 nucleotides

Bulged bases

8VKI|1|A|C|324, 8VKI|1|A|U|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|A|322
8VKI|1|A|C|323
8VKI|1|A|C|324
8VKI|1|A|U|325
8VKI|1|A|A|326
8VKI|1|A|U|327
8VKI|1|A|C|328
8VKI|1|A|U|329
8VKI|1|A|U|330
8VKI|1|A|U|331
*
8VKI|1|A|A|350
8VKI|1|A|G|351
8VKI|1|A|G|352
*
8VKI|1|A|C|443
8VKI|1|A|U|444
8VKI|1|A|U|445
8VKI|1|A|G|446
8VKI|1|A|A|447
8VKI|1|A|U|448
8VKI|1|A|G|449
8VKI|1|A|G|450
8VKI|1|A|U|451
8VKI|1|A|G|452
8VKI|1|A|U|453
8VKI|1|A|U|454

Current chains

Chain A

23S ribosomal RNA

Nearby chains