J3_8VKI_008
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8VKI|1|A|U|801, 8VKI|1|A|A|907, 8VKI|1|A|A|908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKI_008 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0801
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VKI|1|A|U|798
8VKI|1|A|G|799
8VKI|1|A|A|800
8VKI|1|A|U|801
8VKI|1|A|C|802
8VKI|1|A|U|803
8VKI|1|A|A|804
*
8VKI|1|A|U|888
8VKI|1|A|A|889
8VKI|1|A|G|890
*
8VKI|1|A|C|906
8VKI|1|A|A|907
8VKI|1|A|A|908
8VKI|1|A|A|909
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S Ribosomal Protein L4
- Chain d
- 50S ribosomal protein L34
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