J3_8VKI_015
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKI_015 not in the Motif Atlas
- Geometric match to J3_4V9F_017
- Geometric discrepancy: 0.2497
- The information below is about J3_4V9F_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VKI|1|A|U|1646
8VKI|1|A|G|1647
8VKI|1|A|A|1648
8VKI|1|A|C|1649
8VKI|1|A|G|1650
*
8VKI|1|A|C|1784
8VKI|1|A|C|1785
*
8VKI|1|A|G|1788
8VKI|1|A|A|1789
8VKI|1|A|A|1790
8VKI|1|A|A|1791
8VKI|1|A|A|1792
8VKI|1|A|G|1793
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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