J3_8VKW_005

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

8VKW|1|A|U|318, 8VKW|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|G|317
8VKW|1|A|U|318
8VKW|1|A|G|319
*
8VKW|1|A|C|457
8VKW|1|A|G|458
8VKW|1|A|A|459
8VKW|1|A|G|460
8VKW|1|A|U|461
8VKW|1|A|A|462
8VKW|1|A|G|463
*
8VKW|1|A|U|487
8VKW|1|A|G|488
8VKW|1|A|A|489
8VKW|1|A|A|490
8VKW|1|A|U|491
8VKW|1|A|C|492

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S Ribosomal Protein L28