J3_8VKW_010

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CCAGGAG*CUUGAAAG*CACUGG

Length

21 nucleotides

Bulged bases

8VKW|1|A|A|1175, 8VKW|1|A|U|1199, 8VKW|1|A|G|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|C|1170
8VKW|1|A|C|1171
8VKW|1|A|A|1172
8VKW|1|A|G|1173
8VKW|1|A|G|1174
8VKW|1|A|A|1175
8VKW|1|A|G|1176
*
8VKW|1|A|C|1198
8VKW|1|A|U|1199
8VKW|1|A|U|1200
8VKW|1|A|G|1201
8VKW|1|A|A|1202
8VKW|1|A|A|1203
8VKW|1|A|A|1204
8VKW|1|A|G|1205
*
8VKW|1|A|C|1220
8VKW|1|A|A|1221
8VKW|1|A|C|1222
8VKW|1|A|U|1223
8VKW|1|A|G|1224
8VKW|1|A|G|1225

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36