J3_8VKW_015

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKW_015 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.282

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8VKW|1|A|U|1646
8VKW|1|A|G|1647
8VKW|1|A|A|1648
8VKW|1|A|C|1649
8VKW|1|A|G|1650
*
8VKW|1|A|C|1784
8VKW|1|A|C|1785
*
8VKW|1|A|G|1788
8VKW|1|A|A|1789
8VKW|1|A|A|1790
8VKW|1|A|A|1791
8VKW|1|A|A|1792
8VKW|1|A|G|1793

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2