J3_8VKW_020

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

8VKW|1|A|U|3054, 8VKW|1|A|A|3056, 8VKW|1|A|C|3105, 8VKW|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|C|3035
8VKW|1|A|C|3036
8VKW|1|A|C|3037
*
8VKW|1|A|G|3051
8VKW|1|A|A|3052
8VKW|1|A|U|3053
8VKW|1|A|U|3054
8VKW|1|A|G|3055
8VKW|1|A|A|3056
8VKW|1|A|U|3057
*
8VKW|1|A|A|3103
8VKW|1|A|A|3104
8VKW|1|A|C|3105
8VKW|1|A|C|3106
8VKW|1|A|G|3107

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain b

50S ribosomal protein L32