J3_8VL1_021

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VL1|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VL1_021 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0513

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VL1|1|a|G|297
8VL1|1|a|G|298
8VL1|1|a|A|299
8VL1|1|a|A|300
8VL1|1|a|G|301
*
8VL1|1|a|C|316
8VL1|1|a|G|317
8VL1|1|a|C|318
8VL1|1|a|G|319
8VL1|1|a|A|320
8VL1|1|a|U|321
8VL1|1|a|A|322
8VL1|1|a|C|323
8VL1|1|a|A|324
8VL1|1|a|G|325
*
8VL1|1|a|C|337
8VL1|1|a|G|338
8VL1|1|a|U|339
8VL1|1|a|A|340
8VL1|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4