J3_8VL1_024

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|A|1054
8VL1|1|a|G|1055
8VL1|1|a|G|1056
8VL1|1|a|A|1057
*
8VL1|1|a|U|1081
8VL1|1|a|U|1082
8VL1|1|a|U|1083
8VL1|1|a|A|1084
8VL1|1|a|A|1085
8VL1|1|a|A|1086
8VL1|1|a|G|1087
*
8VL1|1|a|C|1102
8VL1|1|a|A|1103
8VL1|1|a|C|1104
8VL1|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36