J3_8VL1_031
3D structure
- PDB id
- 8VL1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 8VL1|1|a|U|2334, 8VL1|1|a|A|2336
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VL1_031 not in the Motif Atlas
- Geometric match to J3_5J7L_071
- Geometric discrepancy: 0.1968
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8VL1|1|a|C|2295
8VL1|1|a|U|2296
8VL1|1|a|A|2297
8VL1|1|a|A|2298
8VL1|1|a|U|2299
*
8VL1|1|a|A|2317
8VL1|1|a|G|2318
8VL1|1|a|G|2319
8VL1|1|a|U|2320
8VL1|1|a|U|2321
8VL1|1|a|A|2322
8VL1|1|a|G|2323
*
8VL1|1|a|C|2332
8VL1|1|a|A|2333
8VL1|1|a|U|2334
8VL1|1|a|A|2335
8VL1|1|a|A|2336
8VL1|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
Coloring options: