J3_8VOO_021

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VOO|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_021 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0513

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOO|1|a|G|297
8VOO|1|a|G|298
8VOO|1|a|A|299
8VOO|1|a|A|300
8VOO|1|a|G|301
*
8VOO|1|a|C|316
8VOO|1|a|G|317
8VOO|1|a|C|318
8VOO|1|a|G|319
8VOO|1|a|A|320
8VOO|1|a|U|321
8VOO|1|a|A|322
8VOO|1|a|C|323
8VOO|1|a|A|324
8VOO|1|a|G|325
*
8VOO|1|a|C|337
8VOO|1|a|G|338
8VOO|1|a|U|339
8VOO|1|a|A|340
8VOO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4