J3_8VOO_022

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8VOO|1|a|U|686, 8VOO|1|a|A|792, 8VOO|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_022 not in the Motif Atlas

Geometric match to J3_5J7L_038

Geometric discrepancy: 0.0585

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VOO|1|a|U|683
8VOO|1|a|G|684
8VOO|1|a|A|685
8VOO|1|a|U|686
8VOO|1|a|C|687
8VOO|1|a|U|688
8VOO|1|a|A|689
*
8VOO|1|a|U|773
8VOO|1|a|G|774
8VOO|1|a|G|775
*
8VOO|1|a|C|791
8VOO|1|a|A|792
8VOO|1|a|A|793
8VOO|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34