J3_8VOO_034

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8VOO|1|a|U|2833, 8VOO|1|a|A|2835

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|a|G|2812
8VOO|1|a|A|2813
8VOO|1|a|A|2814
8VOO|1|a|C|2815
*
8VOO|1|a|G|2831
8VOO|1|a|U|2832
8VOO|1|a|U|2833
8VOO|1|a|G|2834
8VOO|1|a|A|2835
8VOO|1|a|U|2836
*
8VOO|1|a|A|2882
8VOO|1|a|A|2883
8VOO|1|a|U|2884
8VOO|1|a|G|2885
8VOO|1|a|A|2886
8VOO|1|a|A|2887
8VOO|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain w

50S ribosomal protein L17