J3_8VOQ_021

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VOQ|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_021 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0472

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOQ|1|a|G|297
8VOQ|1|a|G|298
8VOQ|1|a|A|299
8VOQ|1|a|A|300
8VOQ|1|a|G|301
*
8VOQ|1|a|C|316
8VOQ|1|a|G|317
8VOQ|1|a|C|318
8VOQ|1|a|G|319
8VOQ|1|a|A|320
8VOQ|1|a|U|321
8VOQ|1|a|A|322
8VOQ|1|a|C|323
8VOQ|1|a|A|324
8VOQ|1|a|G|325
*
8VOQ|1|a|C|337
8VOQ|1|a|G|338
8VOQ|1|a|U|339
8VOQ|1|a|A|340
8VOQ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4