J3_8VOQ_027

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_027 not in the Motif Atlas

Geometric match to J3_5J7L_043

Geometric discrepancy: 0.0614

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8VOQ|1|a|U|1344
8VOQ|1|a|C|1345
8VOQ|1|a|G|1346
8VOQ|1|a|A|1347
8VOQ|1|a|C|1348
8VOQ|1|a|C|1349
*
8VOQ|1|a|G|1382
8VOQ|1|a|A|1383
8VOQ|1|a|A|1384
8VOQ|1|a|A|1385
*
8VOQ|1|a|U|1402
8VOQ|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23