J3_8VOS_015
3D structure
- PDB id
- 8VOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8VOS|1|D|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VOS_015 not in the Motif Atlas
- Geometric match to J3_5J7L_054
- Geometric discrepancy: 0.1022
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VOS|1|D|U|1116
8VOS|1|D|A|1117
8VOS|1|D|U|1118
*
8VOS|1|D|A|1155
8VOS|1|D|G|1156
8VOS|1|D|A|1157
8VOS|1|D|C|1158
8VOS|1|D|U|1159
8VOS|1|D|G|1160
8VOS|1|D|C|1161
*
8VOS|1|D|G|1175
8VOS|1|D|A|1176
8VOS|1|D|G|1177
8VOS|1|D|G|1178
8VOS|1|D|A|1179
8VOS|1|D|A|1180
8VOS|1|D|G|1181
8VOS|1|D|G|1182
8VOS|1|D|U|1183
8VOS|1|D|G|1184
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- Small ribosomal subunit protein uS7
- Chain O
- Small ribosomal subunit protein uS9
- Chain P
- Small ribosomal subunit protein uS10
- Chain S
- Small ribosomal subunit protein uS14
Coloring options: