J3_8VPK_004
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 8VPK|1|A|U|69, 8VPK|1|A|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VPK_004 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.0842
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VPK|1|A|A|53
8VPK|1|A|C|54
*
8VPK|1|A|G|67
8VPK|1|A|A|68
8VPK|1|A|U|69
8VPK|1|A|A|70
8VPK|1|A|A|71
8VPK|1|A|G|72
8VPK|1|A|C|73
*
8VPK|1|A|G|107
8VPK|1|A|A|108
8VPK|1|A|U|109
8VPK|1|A|G|110
8VPK|1|A|U|111
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S Ribosomal Protein L23
- Chain Z
- 50S ribosomal protein L29
- Chain d
- 50S ribosomal protein L34
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