J3_8VPK_005

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

8VPK|1|A|U|318, 8VPK|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|317
8VPK|1|A|U|318
8VPK|1|A|G|319
*
8VPK|1|A|C|457
8VPK|1|A|G|458
8VPK|1|A|A|459
8VPK|1|A|G|460
8VPK|1|A|U|461
8VPK|1|A|A|462
8VPK|1|A|G|463
*
8VPK|1|A|U|487
8VPK|1|A|G|488
8VPK|1|A|A|489
8VPK|1|A|A|490
8VPK|1|A|U|491
8VPK|1|A|C|492

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S Ribosomal Protein L28