J3_8VPK_006

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUAUCUUU*AGG*CUUGAUGGUG

Length

22 nucleotides

Bulged bases

8VPK|1|A|U|330, 8VPK|1|A|U|445, 8VPK|1|A|G|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|323
8VPK|1|A|C|324
8VPK|1|A|U|325
8VPK|1|A|A|326
8VPK|1|A|U|327
8VPK|1|A|C|328
8VPK|1|A|U|329
8VPK|1|A|U|330
8VPK|1|A|U|331
*
8VPK|1|A|A|350
8VPK|1|A|G|351
8VPK|1|A|G|352
*
8VPK|1|A|C|443
8VPK|1|A|U|444
8VPK|1|A|U|445
8VPK|1|A|G|446
8VPK|1|A|A|447
8VPK|1|A|U|448
8VPK|1|A|G|449
8VPK|1|A|G|450
8VPK|1|A|U|451
8VPK|1|A|G|452

Current chains

Chain A

23S ribosomal RNA

Nearby chains