J3_8VPK_007

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCGGAAA*UGCCGUAGAC*GGUACGU

Length

24 nucleotides

Bulged bases

8VPK|1|A|U|403, 8VPK|1|A|G|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|376
8VPK|1|A|C|377
8VPK|1|A|G|378
8VPK|1|A|G|379
8VPK|1|A|A|380
8VPK|1|A|A|381
8VPK|1|A|A|382
*
8VPK|1|A|U|398
8VPK|1|A|G|399
8VPK|1|A|C|400
8VPK|1|A|C|401
8VPK|1|A|G|402
8VPK|1|A|U|403
8VPK|1|A|A|404
8VPK|1|A|G|405
8VPK|1|A|A|406
8VPK|1|A|C|407
*
8VPK|1|A|G|419
8VPK|1|A|G|420
8VPK|1|A|U|421
8VPK|1|A|A|422
8VPK|1|A|C|423
8VPK|1|A|G|424
8VPK|1|A|U|425

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain V

50S ribosomal protein L24