J3_8VPK_008

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8VPK|1|A|U|801, 8VPK|1|A|A|907, 8VPK|1|A|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VPK_008 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0978

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|U|798
8VPK|1|A|G|799
8VPK|1|A|A|800
8VPK|1|A|U|801
8VPK|1|A|C|802
8VPK|1|A|U|803
8VPK|1|A|A|804
*
8VPK|1|A|U|888
8VPK|1|A|A|889
8VPK|1|A|G|890
*
8VPK|1|A|C|906
8VPK|1|A|A|907
8VPK|1|A|A|908
8VPK|1|A|A|909

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34