J3_8VPK_016
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGUAUUG*UCUAAC*GGACAGUGC
- Length
- 22 nucleotides
- Bulged bases
- 8VPK|1|A|A|2421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|G|2310
8VPK|1|A|G|2311
8VPK|1|A|U|2312
8VPK|1|A|A|2313
8VPK|1|A|U|2314
8VPK|1|A|U|2315
8VPK|1|A|G|2316
*
8VPK|1|A|U|2418
8VPK|1|A|C|2419
8VPK|1|A|U|2420
8VPK|1|A|A|2421
8VPK|1|A|A|2422
8VPK|1|A|C|2423
*
8VPK|1|A|G|2447
8VPK|1|A|G|2448
8VPK|1|A|A|2449
8VPK|1|A|C|2450
8VPK|1|A|A|2451
8VPK|1|A|G|2452
8VPK|1|A|U|2453
8VPK|1|A|G|2454
8VPK|1|A|C|2455
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S Ribosomal Protein L28
Coloring options: