J3_8VPK_017
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UAAGUGCACAAGGGAGCUUGAC*GGG*CGGGACUAG
- Length
- 34 nucleotides
- Bulged bases
- 8VPK|1|A|A|2551, 8VPK|1|A|C|2556, 8VPK|1|A|A|2557, 8VPK|1|A|C|2558, 8VPK|1|A|A|2560, 8VPK|1|A|U|2568, 8VPK|1|A|A|2570, 8VPK|1|A|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|U|2550
8VPK|1|A|A|2551
8VPK|1|A|A|2552
8VPK|1|A|G|2553
8VPK|1|A|U|2554
8VPK|1|A|G|2555
8VPK|1|A|C|2556
8VPK|1|A|A|2557
8VPK|1|A|C|2558
8VPK|1|A|A|2559
8VPK|1|A|A|2560
8VPK|1|A|G|2561
8VPK|1|A|G|2562
8VPK|1|A|G|2563
8VPK|1|A|A|2564
8VPK|1|A|G|2565
8VPK|1|A|C|2566
8VPK|1|A|U|2567
8VPK|1|A|U|2568
8VPK|1|A|G|2569
8VPK|1|A|A|2570
8VPK|1|A|C|2571
*
8VPK|1|A|G|2594
8VPK|1|A|G|2595
8VPK|1|A|G|2596
*
8VPK|1|A|C|2605
8VPK|1|A|G|2606
8VPK|1|A|G|2607
8VPK|1|A|G|2608
8VPK|1|A|A|2609
8VPK|1|A|C|2610
8VPK|1|A|U|2611
8VPK|1|A|A|2612
8VPK|1|A|G|2613
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S Ribosomal Protein L5
- Chain N
- Large ribosomal subunit protein uL16
- Chain P
- 50S Ribosomal Protein L18
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
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