J3_8VR4_009

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGGUUGG*CCACCCUUGAAAG*CAC

Length

25 nucleotides

Bulged bases

8VR4|1|A|A|1175, 8VR4|1|A|G|1177, 8VR4|1|A|U|1179, 8VR4|1|A|C|1197, 8VR4|1|A|U|1200, 8VR4|1|A|G|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|G|1173
8VR4|1|A|G|1174
8VR4|1|A|A|1175
8VR4|1|A|G|1176
8VR4|1|A|G|1177
8VR4|1|A|U|1178
8VR4|1|A|U|1179
8VR4|1|A|G|1180
8VR4|1|A|G|1181
*
8VR4|1|A|C|1193
8VR4|1|A|C|1194
8VR4|1|A|A|1195
8VR4|1|A|C|1196
8VR4|1|A|C|1197
8VR4|1|A|C|1198
8VR4|1|A|U|1199
8VR4|1|A|U|1200
8VR4|1|A|G|1201
8VR4|1|A|A|1202
8VR4|1|A|A|1203
8VR4|1|A|A|1204
8VR4|1|A|G|1205
*
8VR4|1|A|C|1220
8VR4|1|A|A|1221
8VR4|1|A|C|1222

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11