J3_8VR4_016

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCAA*UGUUGAG*CACAAG

Length

18 nucleotides

Bulged bases

8VR4|1|A|C|2558, 8VR4|1|A|A|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|C|2519
8VR4|1|A|U|2520
8VR4|1|A|C|2521
8VR4|1|A|A|2522
8VR4|1|A|A|2523
*
8VR4|1|A|U|2541
8VR4|1|A|G|2542
8VR4|1|A|U|2543
8VR4|1|A|U|2544
8VR4|1|A|G|2545
8VR4|1|A|A|2546
8VR4|1|A|G|2547
*
8VR4|1|A|C|2556
8VR4|1|A|A|2557
8VR4|1|A|C|2558
8VR4|1|A|A|2559
8VR4|1|A|A|2560
8VR4|1|A|G|2561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S Ribosomal Protein L5

Chain P

50S Ribosomal Protein L18

Chain X

50S ribosomal protein L27