J3_8VRL_005

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

8VRL|1|A|U|318, 8VRL|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|G|317
8VRL|1|A|U|318
8VRL|1|A|G|319
*
8VRL|1|A|C|457
8VRL|1|A|G|458
8VRL|1|A|A|459
8VRL|1|A|G|460
8VRL|1|A|U|461
8VRL|1|A|A|462
8VRL|1|A|G|463
*
8VRL|1|A|U|487
8VRL|1|A|G|488
8VRL|1|A|A|489
8VRL|1|A|A|490
8VRL|1|A|U|491
8VRL|1|A|C|492

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

Large ribosomal subunit protein bL28