J3_8VRL_006

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACCUAUCUUU*AGG*CUUGAUGGUGUU

Length

25 nucleotides

Bulged bases

8VRL|1|A|U|330, 8VRL|1|A|U|445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|A|322
8VRL|1|A|C|323
8VRL|1|A|C|324
8VRL|1|A|U|325
8VRL|1|A|A|326
8VRL|1|A|U|327
8VRL|1|A|C|328
8VRL|1|A|U|329
8VRL|1|A|U|330
8VRL|1|A|U|331
*
8VRL|1|A|A|350
8VRL|1|A|G|351
8VRL|1|A|G|352
*
8VRL|1|A|C|443
8VRL|1|A|U|444
8VRL|1|A|U|445
8VRL|1|A|G|446
8VRL|1|A|A|447
8VRL|1|A|U|448
8VRL|1|A|G|449
8VRL|1|A|G|450
8VRL|1|A|U|451
8VRL|1|A|G|452
8VRL|1|A|U|453
8VRL|1|A|U|454

Current chains

Chain A

23S ribosomal RNA

Nearby chains