J3_8VRL_008

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8VRL|1|A|U|801, 8VRL|1|A|A|907, 8VRL|1|A|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VRL_008 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1015

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|U|798
8VRL|1|A|G|799
8VRL|1|A|A|800
8VRL|1|A|U|801
8VRL|1|A|C|802
8VRL|1|A|U|803
8VRL|1|A|A|804
*
8VRL|1|A|U|888
8VRL|1|A|A|889
8VRL|1|A|G|890
*
8VRL|1|A|C|906
8VRL|1|A|A|907
8VRL|1|A|A|908
8VRL|1|A|A|909

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34