J3_8VRL_010

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCAGGAGGUUGGC*GCCACCCUUGAAAG*CACUGG

Length

33 nucleotides

Bulged bases

8VRL|1|A|A|1175, 8VRL|1|A|G|1177, 8VRL|1|A|U|1179, 8VRL|1|A|A|1195, 8VRL|1|A|C|1196, 8VRL|1|A|C|1197, 8VRL|1|A|U|1200, 8VRL|1|A|G|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|C|1170
8VRL|1|A|C|1171
8VRL|1|A|A|1172
8VRL|1|A|G|1173
8VRL|1|A|G|1174
8VRL|1|A|A|1175
8VRL|1|A|G|1176
8VRL|1|A|G|1177
8VRL|1|A|U|1178
8VRL|1|A|U|1179
8VRL|1|A|G|1180
8VRL|1|A|G|1181
8VRL|1|A|C|1182
*
8VRL|1|A|G|1192
8VRL|1|A|C|1193
8VRL|1|A|C|1194
8VRL|1|A|A|1195
8VRL|1|A|C|1196
8VRL|1|A|C|1197
8VRL|1|A|C|1198
8VRL|1|A|U|1199
8VRL|1|A|U|1200
8VRL|1|A|G|1201
8VRL|1|A|A|1202
8VRL|1|A|A|1203
8VRL|1|A|A|1204
8VRL|1|A|G|1205
*
8VRL|1|A|C|1220
8VRL|1|A|A|1221
8VRL|1|A|C|1222
8VRL|1|A|U|1223
8VRL|1|A|G|1224
8VRL|1|A|G|1225

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36