J3_8VRL_016
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUG*CGGUGGUAACUAUAACCAUCCUAAGGUAG*CGAAUG
- Length
- 38 nucleotides
- Bulged bases
- 8VRL|1|A|A|2137, 8VRL|1|A|C|2138, 8VRL|1|A|A|2140, 8VRL|1|A|U|2141, 8VRL|1|A|U|2195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VRL|1|A|C|2050
8VRL|1|A|U|2051
8VRL|1|A|G|2052
*
8VRL|1|A|C|2129
8VRL|1|A|G|2130
8VRL|1|A|G|2131
8VRL|1|A|U|2132
8VRL|1|A|G|2133
8VRL|1|A|G|2134
8VRL|1|A|U|2135
8VRL|1|A|A|2136
8VRL|1|A|A|2137
8VRL|1|A|C|2138
8VRL|1|A|U|2139
8VRL|1|A|A|2140
8VRL|1|A|U|2141
8VRL|1|A|A|2142
8VRL|1|A|A|2143
8VRL|1|A|C|2144
8VRL|1|A|C|2145
8VRL|1|A|A|2146
8VRL|1|A|U|2147
8VRL|1|A|C|2148
8VRL|1|A|C|2149
8VRL|1|A|U|2150
8VRL|1|A|A|2151
8VRL|1|A|A|2152
8VRL|1|A|G|2153
8VRL|1|A|G|2154
8VRL|1|A|U|2155
8VRL|1|A|A|2156
8VRL|1|A|G|2157
*
8VRL|1|A|C|2191
8VRL|1|A|G|2192
8VRL|1|A|A|2193
8VRL|1|A|A|2194
8VRL|1|A|U|2195
8VRL|1|A|G|2196
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain C
- 50S ribosomal protein L2
Coloring options: