J3_8VRL_021

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

8VRL|1|A|U|3054, 8VRL|1|A|A|3056, 8VRL|1|A|C|3105, 8VRL|1|A|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|C|3035
8VRL|1|A|C|3036
8VRL|1|A|C|3037
*
8VRL|1|A|G|3051
8VRL|1|A|A|3052
8VRL|1|A|U|3053
8VRL|1|A|U|3054
8VRL|1|A|G|3055
8VRL|1|A|A|3056
8VRL|1|A|U|3057
*
8VRL|1|A|A|3103
8VRL|1|A|A|3104
8VRL|1|A|C|3105
8VRL|1|A|C|3106
8VRL|1|A|G|3107

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain b

50S ribosomal protein L32