J3_8VSA_010

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_010 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.102

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8VSA|1|23S|C|698
8VSA|1|23S|A|699
8VSA|1|23S|G|700
*
8VSA|1|23S|C|732
8VSA|1|23S|G|733
8VSA|1|23S|A|734
8VSA|1|23S|A|735
8VSA|1|23S|C|736
*
8VSA|1|23S|G|760
8VSA|1|23S|A|761
8VSA|1|23S|U|762
8VSA|1|23S|G|763

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2