J3_8VSA_011

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAU*AUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|1055
8VSA|1|23S|G|1056
8VSA|1|23S|A|1057
8VSA|1|23S|U|1058
*
8VSA|1|23S|A|1080
8VSA|1|23S|U|1081
8VSA|1|23S|U|1082
8VSA|1|23S|U|1083
8VSA|1|23S|A|1084
8VSA|1|23S|A|1085
8VSA|1|23S|A|1086
8VSA|1|23S|G|1087
*
8VSA|1|23S|C|1102
8VSA|1|23S|A|1103
8VSA|1|23S|C|1104

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L10

50S ribosomal protein L10

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36